9MGB image
Deposition Date 2024-12-10
Release Date 2025-08-06
Last Version Date 2025-10-15
Entry Detail
PDB ID:
9MGB
Keywords:
Title:
scFv antibody CL33 bound to R-phycoerythrin
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Neopyropia tenera (Taxon ID: 2785)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:R-phycoerythrin alpha chain
Chain IDs:A, C, E (auth: F), G (auth: I), I (auth: L), K (auth: O)
Chain Length:257
Number of Molecules:6
Biological Source:Neopyropia tenera
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:R-phycoerythrin beta chain
Chain IDs:B, D, F (auth: G), H (auth: J), J (auth: M), L (auth: Q)
Chain Length:176
Number of Molecules:6
Biological Source:Neopyropia tenera
Polymer Type:polypeptide(L)
Molecule:CL33 scFv
Chain IDs:M (auth: a), N (auth: c), O (auth: e), P (auth: g), Q (auth: i), R (auth: k)
Chain Length:257
Number of Molecules:6
Biological Source:Mus musculus
Primary Citation
Antibody-like recognition of a gamma delta T cell receptor toward a foreign antigen.
Structure 33 1649 ? (2025)
PMID: 40744007 DOI: 10.1016/j.str.2025.07.006

Abstact

The antigen recognition principles of B cells and αβ T cells have been well described compared to those of the γδ T cell. By way of their specificity conferring receptor (γδTCR), γδ T cells can directly bind proteinaceous antigens. A known γδ T cell and B cell model antigen is phycoerythrin (PE), a light harvesting protein from rhodophytes and cyanobacteria. Here we probed human γδTCR reactivity to PE, in which a Vδ1Vγ5 TCR bound directly to induce proximal signaling and cellular activation. We determined the cryoelectron microscopy (cryo-EM) structure of the γδTCR-phycoerythrin immune complex. We then determined the cryo-EM structures of an antibody fragment and an αβTCR bound to PE. This revealed convergent use of apical aromatic residues to mediate contacts with a common PE epitope. Comparative analyses of the γδTCR revealed multiple antibody-like characteristics, including an enrichment of apical aromatic residues. Our findings reveal further distinct facets of antigen recognition by the γδTCR.

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