9M4F image
Deposition Date 2025-03-04
Release Date 2025-08-27
Last Version Date 2025-08-27
Entry Detail
PDB ID:
9M4F
Keywords:
Title:
Photosystem I from the eukaryotic filamentous algae
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.82 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein XLH1
Chain IDs:A (auth: 1)
Chain Length:220
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH2
Chain IDs:B (auth: 2)
Chain Length:194
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH3
Chain IDs:C (auth: 3)
Chain Length:205
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH4
Chain IDs:D (auth: 4)
Chain Length:231
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH5
Chain IDs:E (auth: 5)
Chain Length:216
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH6/10
Chain IDs:F (auth: 6), J (auth: h)
Chain Length:212
Number of Molecules:2
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH7
Chain IDs:G (auth: 7)
Chain Length:207
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH8
Chain IDs:H (auth: 8)
Chain Length:179
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH9/13
Chain IDs:I (auth: 9), M (auth: k)
Chain Length:215
Number of Molecules:2
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaA
Chain IDs:N (auth: A)
Chain Length:749
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaB
Chain IDs:O (auth: B)
Chain Length:734
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaC
Chain IDs:P (auth: C)
Chain Length:81
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaD
Chain IDs:Q (auth: D)
Chain Length:139
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaE
Chain IDs:R (auth: E)
Chain Length:61
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaF
Chain IDs:S (auth: F)
Chain Length:185
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaI
Chain IDs:T (auth: I)
Chain Length:36
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaJ
Chain IDs:U (auth: J)
Chain Length:42
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaL
Chain IDs:V (auth: L)
Chain Length:149
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaM
Chain IDs:W (auth: M)
Chain Length:30
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PsaR
Chain IDs:X (auth: R)
Chain Length:87
Number of Molecules:1
Biological Source:Tribonema minus
Polymer Type:polypeptide(L)
Molecule:PsaS
Chain IDs:Y (auth: S)
Chain Length:134
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH11
Chain IDs:K (auth: c)
Chain Length:81
Number of Molecules:1
Biological Source:Tribonema minus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:light-harvesting protein XLH12
Chain IDs:L (auth: t)
Chain Length:228
Number of Molecules:1
Biological Source:Tribonema minus
Primary Citation
Architecture of photosystem I-light-harvesting complex from the eukaryotic filamentous yellow-green alga Tribonema minus.
J Integr Plant Biol ? ? ? (2025)
PMID: 40778523 DOI: 10.1111/jipb.70010

Abstact

Eukaryotic photosystem I (PSI) is a multi-subunit pigment-protein supercomplex that consists of a core complex and multiple peripheral light-harvesting complexes I (LHCIs), which increases the light absorption capacity of the core complex. Throughout the evolution of oxygenic photoautotrophs, the core subunits of PSI have remained highly conserved, while LHCIs exhibit significant variability, presumably to adapt to diverse environments. This study presents a 2.82 Å resolution structure of PSI from the filamentous yellow-green alga Tribonema minus (Tm), a member of the class Xanthophyceae that evolved from red algae through endosymbiosis and is considered a promising candidate for biofuel production due to its high biomass and lipid content. Our structure reveals a supramolecular organization consisting of 12 core subunits and 13 LHCIs, here referred to as Xanthophyceae light-harvesting complexes (XLHs), along with the arrangement of pigments within the TmPSI-XLH supercomplex. A structural comparison between TmPSI-XLH and PSI-LHCI from various red lineages highlights distinctive features of TmPSI-XLH, suggesting that it represents a unique intermediate state in the PSI assembly process during the evolutionary transition from red algae to diatoms. Our findings advance the understanding of the molecular mechanisms responsible for energy transfer in Xanthophyceae PSI-XLH and the evolutionary adaptation of red lineages.

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