9LYF image
Entry Detail
PDB ID:
9LYF
Keywords:
Title:
Structure-based Discovery of Novel non-Covalent Small Molecule Inhibitors of USP30
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2025-02-20
Release Date:
2025-05-21
Method Details:
Experimental Method:
Resolution:
2.58 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ubiquitin carboxyl-terminal hydrolase 30
Mutations:F348D,M350S,I353E
Chain IDs:A
Chain Length:336
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure-based discovery of novel non-covalent small molecule inhibitors of USP30.
J.Comput.Aided Mol.Des. 39 19 19 (2025)
PMID: 40274689 DOI: 10.1007/s10822-025-00596-2

Abstact

Ubiquitin-specific proteases (USPs) are crucial regulators of protein degradation pathways, influencing diverse cellular processes and disease mechanisms. Among them, USP30 plays a pivotal role in mitochondrial quality control and has been implicated in idiopathic pulmonary fibrosis (IPF), a chronic lung disease for which current therapies merely slow disease progression. The high flexibility of USP30's catalytic site, coupled with its dependence on covalent interaction with the catalytic cysteine presents significant challenges in discovering suitable small molecule inhibitors. In this study, we identified three non-covalent small molecule inhibitors for USP30 using molecular modeling, X-ray crystallography, and virtual screening. These findings offer valuable insights and novel chemical starting points for further medicinal chemistry optimization.

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