9LXL image
Deposition Date 2025-02-18
Release Date 2025-03-19
Last Version Date 2025-08-27
Entry Detail
PDB ID:
9LXL
Keywords:
Title:
Crystal structure of GH29 family alpha-L-fucosidase from Fusarium proliferatum LE1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.19 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:alpha-L-fucosidase
Gene (Uniprot):FPRO05_08134
Chain IDs:A
Chain Length:620
Number of Molecules:1
Biological Source:Gibberella intermedia
Primary Citation
Structure and biochemical characterization of GH29 family alpha-l-fucosidase from Fusarium proliferatum LE1.
Biochem.Biophys.Res.Commun. 779 152451 152451 (2025)
PMID: 40782452 DOI: 10.1016/j.bbrc.2025.152451

Abstact

Alpha-L-fucosidases are essential tools for studying the structure-function relationships of fucosylated sugars and for the synthesis of glycoconjugates. Despite their significant potential in biotechnology, detailed structural and mechanistic aspects of these enzymes remain poorly understood. In this study, we identified a novel α-l-fucosidase from the fungus Fusarium proliferatum LE1, belonging to the GH29 family of glycoside hydrolases. The recombinant protein was purified and biochemically characterized. The crystal structure of the enzyme was determined at anisotropic resolution of 2.2-2.6 Å in the closed conformation of the active site. Structural comparison with homologous proteins revealed a conserved catalytic domain and a non-conserved C-terminal domain, which displays significant flexibility in the crystal, as confirmed by molecular dynamics simulations. We propose that this flexibility reflects intrinsic enzyme dynamics, enabling substrate recognition, binding, and translocation to the active site.

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