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9LX0 image
Deposition Date 2025-02-17
Release Date 2025-11-19
Last Version Date 2025-11-26
Entry Detail
PDB ID:
9LX0
Title:
DOCK5/ELMO1 complex with RhoG and Rac1 on lipid membrane
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
6.98 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Engulfment and cell motility protein 1
Gene (Uniprot):ELMO1
Chain IDs:A, E
Chain Length:733
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dedicator of cytokinesis protein 5
Gene (Uniprot):DOCK5
Chain IDs:B, F
Chain Length:1876
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Rho-related GTP-binding protein RhoG
Gene (Uniprot):RHOG
Mutagens:Q61L
Chain IDs:C, G
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ras-related C3 botulinum toxin substrate 1
Gene (Uniprot):RAC1
Mutagens:G15A, C189S
Chain IDs:D, H
Chain Length:206
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Conformational alteration of DOCK5•ELMO1 signalosome on lipid membrane.
Commun Biol 8 1523 1523 (2025)
PMID: 41233496 DOI: 10.1038/s42003-025-09113-5

Abstact

The DOCK protein family activates Rho small GTPases through guanine nucleotide exchange factor (GEF) activity. DOCK is thought to exert its GEF activity at the plasma membrane. However, the mechanism by which DOCK activity on the plasma membrane is regulated remains unclear. Herein, we present a new conformation in which DOCK5, ELMO1, RhoG, and Rac1 are aligned on a plane and symmetrically flattened, as revealed by cryo-EM using a lipid membrane-coated grid. The major conformational change leading to this structure results from rotation of each DOCK5•ELMO1 hinge site through interactions with the membrane. Biochemical and cellular experiments indicate that conformational changes driven by acidic lipids are important for regulating the GEF activity of the DOCK5•ELMO1 complex on the plasma membrane and are essential for its downstream signalling. This approach also enables the analysis of large lipid-associated complexes, such as signalosomes, and will aid studies of membrane-dependent signalling assemblies.

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Primary Citation of related structures
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