9LW8 image
Entry Detail
PDB ID:
9LW8
EMDB ID:
Keywords:
Title:
Bottom cap of bacteriophage Mycofy1 mature head (C5 symmetry)
Biological Source:
PDB Version:
Deposition Date:
2025-02-13
Release Date:
2025-04-16
Method Details:
Experimental Method:
Resolution:
3.53 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Phage capsid-like C-terminal domain-containing protein
Chain IDs:A (auth: 1), B (auth: 2), C (auth: 3), D (auth: 4), E (auth: 5), F (auth: A), G (auth: B), H (auth: C), I (auth: D), J (auth: E), K (auth: F), L (auth: G), M (auth: H), N (auth: I), O (auth: J), P (auth: K), Q (auth: L), R (auth: M), S (auth: N), T (auth: O), U (auth: P), V (auth: Q), W (auth: R), X (auth: S), Y (auth: T), Z (auth: U), AA (auth: V), BA (auth: W), CA (auth: X), DA (auth: Y), EA (auth: Z), FA (auth: a), GA (auth: b), HA (auth: c), IA (auth: d), JA (auth: e), KA (auth: f), LA (auth: g), MA (auth: h), NA (auth: i), OA (auth: j), PA (auth: k), QA (auth: l), RA (auth: m), SA (auth: n), TA (auth: o), UA (auth: p), VA (auth: q), WA (auth: r), XA (auth: s), YA (auth: t), ZA (auth: u), AB (auth: v)
Chain Length:543
Number of Molecules:53
Biological Source:Mycolicibacterium phage Mycofy1
Ligand Molecules
Primary Citation
Cryo-EM Reveals Structural Diversity in Prolate-headed Mycobacteriophage Mycofy1.
J.Mol.Biol. 437 169126 169126 (2025)
PMID: 40187685 DOI: 10.1016/j.jmb.2025.169126

Abstact

Mycobacteriophages show promise in treating antibiotic-resistant mycobacterial infections. Here, we isolated Mycofy1, a mycobacteriophage, using M. smegmatis as a host. Cryo-EM analysis revealed that Mycofy1 possesses a prolate head and a long non-contractile tail. We determined structures of its head, head-to-tail interface, terminator, and tail tube to resolutions of ∼3.5 Å. Unexpectedly, we identified two distinct types of prolate head structures, exhibiting a 36° relative rotation in the top cap region. Additionally, the head-to-tail interface demonstrated flexibility. Our structures provide high-resolution cryo-EM data of a mycobacteriophage with a prolate head, as well as detailed structural information of the head-to-tail interface and head-proximal tail region in this phage group. These findings advance our understanding of assembly mechanisms in tailed bacteriophages.

Legend

Protein

Chemical

Disease

Primary Citation of related structures