9LW6 image
Deposition Date 2025-02-13
Release Date 2025-04-16
Last Version Date 2025-04-30
Entry Detail
PDB ID:
9LW6
Keywords:
Title:
Top cap of bacteriophage Mycofy1 mature head (C5 symmetry)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.42 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phage capsid-like C-terminal domain-containing protein
Gene (Uniprot):6
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA (auth: a), BA (auth: b), CA (auth: c), DA (auth: d), EA (auth: e), FA (auth: f), GA (auth: g), HA (auth: h), IA (auth: i), JA (auth: j), KA (auth: k), LA (auth: l), MA (auth: m), NA (auth: n), OA (auth: o), PA (auth: p), QA (auth: q), RA (auth: r), SA (auth: s), TA (auth: t), UA (auth: u), VA (auth: v), WA (auth: w), XA (auth: 1), YA (auth: 2), ZA (auth: 3), AB (auth: 4), BB (auth: 5)
Chain Length:543
Number of Molecules:54
Biological Source:Mycolicibacterium phage Mycofy1
Ligand Molecules
Primary Citation
Cryo-EM Reveals Structural Diversity in Prolate-headed Mycobacteriophage Mycofy1.
J.Mol.Biol. 437 169126 169126 (2025)
PMID: 40187685 DOI: 10.1016/j.jmb.2025.169126

Abstact

Mycobacteriophages show promise in treating antibiotic-resistant mycobacterial infections. Here, we isolated Mycofy1, a mycobacteriophage, using M. smegmatis as a host. Cryo-EM analysis revealed that Mycofy1 possesses a prolate head and a long non-contractile tail. We determined structures of its head, head-to-tail interface, terminator, and tail tube to resolutions of ∼3.5 Å. Unexpectedly, we identified two distinct types of prolate head structures, exhibiting a 36° relative rotation in the top cap region. Additionally, the head-to-tail interface demonstrated flexibility. Our structures provide high-resolution cryo-EM data of a mycobacteriophage with a prolate head, as well as detailed structural information of the head-to-tail interface and head-proximal tail region in this phage group. These findings advance our understanding of assembly mechanisms in tailed bacteriophages.

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Protein

Chemical

Disease

Primary Citation of related structures