9LVD image
Deposition Date 2025-02-12
Release Date 2025-02-26
Last Version Date 2025-09-10
Entry Detail
PDB ID:
9LVD
Keywords:
Title:
Temperature induces a shift from the dihexamer to the hexamer form of insulin (200K)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.33
R-Value Work:
0.28
R-Value Observed:
0.3
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Insulin A chain
Gene (Uniprot):INS
Chain IDs:A, C
Chain Length:21
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Insulin B chain
Gene (Uniprot):INS
Chain IDs:B, D
Chain Length:29
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Temperature induces a shift from insulin dihexamer to hexamer in collective dynamics.
Protein Sci. 34 e70245 e70245 (2025)
PMID: 40815299 DOI: 10.1002/pro.70245

Abstact

Structures based on x-ray diffraction data collected at 2.3, 2.88, and 2.95 Å resolutions have been determined for long-acting dihexamer insulin at three different temperatures, ranging from 100 to 300 K. It has been observed that the unit-cell parameters of the insulin crystal at 100 K change at 200 K. This change is likely due to the subtle repacking of the rhombohedral insulin crystal and the loss of noncovalent interactions involving myristic acid, which binds two hexamers. Computational analyses indicate that allosteric residues and fatty acid-binding residues of insulin hexamers exhibit reduced collective dynamics and inter-residue coupling, possibly resulting from increased structural fluctuations due to elevated thermal vibrations. This transition has been observed at a characteristic temperature of 200 K, potentially highlighting underlying alterations in the dynamic structure of the fatty acid-solvent interface in the dimer of hexamers. Combined with computational analyses, these findings provide key insights into thermal stability mechanisms, which are crucial for developing thermostable insulin formulations in industrial applications.

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