9LUP image
Deposition Date 2025-02-09
Release Date 2025-07-09
Last Version Date 2025-07-09
Entry Detail
PDB ID:
9LUP
Keywords:
Title:
Cryo-EM structure of Arabidopsis thaliana RGA in complex with GID1A, SLY1, and ASK2 (composite map)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DELLA protein RGA
Gene (Uniprot):RGA
Chain IDs:A
Chain Length:588
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Polymer Type:polypeptide(L)
Molecule:Gibberellin receptor GID1A
Gene (Uniprot):GID1A
Chain IDs:B
Chain Length:347
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Polymer Type:polypeptide(L)
Molecule:F-box protein GID2
Gene (Uniprot):GID2
Chain IDs:C
Chain Length:153
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Polymer Type:polypeptide(L)
Molecule:SKP1-like protein 1B
Gene (Uniprot):SKP1B
Chain IDs:D
Chain Length:173
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
Structural insights of gibberellin-mediated DELLA protein degradation.
Mol Plant ? ? ? (2025)
PMID: 40542507 DOI: 10.1016/j.molp.2025.06.010

Abstact

Gibberellin promotes plant growth by downregulating DELLA proteins, which act as growth repressors. In the presence of gibberellin, the gibberellin receptor GID1 binds DELLA proteins, triggering their degradation through polyubiquitination by the SCFSLY1/GID2 ubiquitin E3 ligase. Despite extensive studies, the molecular mechanisms by which DELLA proteins assemble with SCFSLY1/GID2 to regulate plant growth remain poorly understood. Here, we present two cryo-electron microscopy structures of the Arabidopsis thaliana DELLA protein RGA in complex with GID1A and GID1A-SLY1-ASK2, respectively. Structural analyses revealed that RGA interacts with GID1A and SLY1 through nonoverlapping binding surfaces, stabilizing the proteins. This suggests that the SCFSLY1-RGA-GID1A complex assembles through a stepwise stabilization process induced by gibberellin. Furthermore, structural comparison with GRAS proteins indicates that RGA does not interact with IDD-family transcription factors when bound to SLY1, suggesting that DELLA protein binding to GID1/SLY1 and to transcription factors is mutually exclusive. These findings provide new insights into the gibberellin-mediated regulation of transcription factor activity by DELLA proteins.

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Primary Citation of related structures