9LUK image
Deposition Date 2025-02-08
Release Date 2025-10-08
Last Version Date 2025-12-10
Entry Detail
PDB ID:
9LUK
Keywords:
Title:
Crystal structure of Switchbody based on anti-osteocalcin antibody KTM219 Fab
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy chain fragment (Fd) of anti-osteocalcin antibody KTM219 with N-terminal HiBiT
Chain IDs:A (auth: H)
Chain Length:278
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Light chain of anti-osteocalcin antibody KTM219
Chain IDs:B (auth: L)
Chain Length:232
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Switchbody, an Antigen-Responsive Enzyme Switch Based on Antibody and Its Working Principle.
Adv Sci 12 e08422 e08422 (2025)
PMID: 40953287 DOI: 10.1002/advs.202508422

Abstact

An enzyme switch, termed "Switchbody", is developed by fusing an antibody with a fragment of a split enzyme for the precise regulation of enzyme activity in response to an antigen. A luciferase-based Switchbody is engineered by fusing the NanoLuc luciferase fragment HiBiT to the N-terminus of an antibody. The enzyme activity of the Switchbody increases upon the addition of an antigen in a dose-dependent manner in the presence of the complementary fragment LgBiT and its substrate furimazine, demonstrating the potential of the luciferase-based Switchbody as a biosensor. As its working principle, ELISA shows that the interaction between HiBiT and LgBiT is facilitated by antigen binding. Moreover, X-ray crystallography and NMR reveal the heterogeneous trapped state of the HiBiT region and an increasing motility of HiBiT region upon antigen binding, respectively. MD simulations and luminescence measurements show that antigen disrupted the trapping of HiBiT in the antibody, enabling its release. By applying this "Trap and Release" principle to Protein M, an antibody-binding protein, label-free IgG antibodies are successfully converted into bioluminescent Switchbodies. This adaptable Switchbody platform has the potential to expand switching technology beyond luciferase to various other enzymes in the future.

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Primary Citation of related structures
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