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9LUE image
Deposition Date 2025-02-08
Release Date 2025-11-26
Last Version Date 2025-12-10
Entry Detail
PDB ID:
9LUE
Title:
Cryo-EM structure of the Nipah G head domain in complex with three Fabs
Method Details:
Experimental Method:
Resolution:
3.03 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NiV S2B10 Fab Heavy Chain
Chain IDs:C (auth: A)
Chain Length:119
Number of Molecules:1
Biological Source:Mesocricetus auratus
Polymer Type:polypeptide(L)
Molecule:NiV S2B10 Fab Light Chain
Chain IDs:D (auth: B)
Chain Length:111
Number of Molecules:1
Biological Source:Mesocricetus auratus
Polymer Type:polypeptide(L)
Molecule:NiV S1E2 Fab Heavy Chain
Chain IDs:E (auth: C)
Chain Length:120
Number of Molecules:1
Biological Source:Mesocricetus auratus
Polymer Type:polypeptide(L)
Molecule:NiV S1E2 Fab Light Chain
Chain IDs:F (auth: D)
Chain Length:106
Number of Molecules:1
Biological Source:Mesocricetus auratus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycoprotein G
Gene (Uniprot):G
Chain IDs:A (auth: G)
Chain Length:426
Number of Molecules:1
Biological Source:Henipavirus nipahense
Polymer Type:polypeptide(L)
Molecule:NIV LN3D3 Fab Heavy Chain
Chain IDs:G (auth: H)
Chain Length:119
Number of Molecules:1
Biological Source:Mesocricetus auratus
Polymer Type:polypeptide(L)
Molecule:NIV LN3D3 Fab Light Chain
Chain IDs:B (auth: L)
Chain Length:107
Number of Molecules:1
Biological Source:Mesocricetus auratus
Ligand Molecules
Primary Citation
Antigenic landscape of Nipah virus attachment glycoprotein analysis reveals a protective immunodominant epitope across species.
Npj Vaccines ? ? ? (2025)
PMID: 41315143 DOI: 10.1038/s41541-025-01319-2

Abstact

Nipah virus (NiV) and Hendra virus (HeV), two highly pathogenic Henipaviruses (HNVs), pose a significant public health threat. The attachment glycoprotein (G) plays a crucial role in viral attachment and entry, making it an attractive target for vaccine and therapeutic antibody development. However, the antigenic landscape and neutralization sensitivity of the diverse HNV G proteins remain poorly defined. Here, we systematically characterize 27 monoclonal antibodies (mAbs) elicited by NiV G head (GH) nanoparticle-immunized mice. Among these, 25 mAbs exhibit neutralizing activity against two major NiV strains, NiV-Malaysia and NiV-Bangladesh, with five mAbs also cross-inhibiting HeV infection. Notably, mAbs from two distinct groups conferred complete protection to hamsters against lethal NiV-Malaysia challenge. Structural analysis of NiV GH in complex with representative Fabs reveals four non-overlapping epitopes, including two novel antigenic sites and one public protective epitope shared across species. MAbs targeting the novel sites bind to the top or side faces of G protein's β-propeller and inhibit viral infection by blocking either receptor engagement or membrane fusion. MAbs recognizing the public epitope block the receptor binding directly. Our study provides a comprehensive antigenic map of the NiV GH and offers new insights and opportunities for antibody-based therapies and rational vaccine development.

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Primary Citation of related structures
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