9LU3 image
Deposition Date 2025-02-07
Release Date 2025-11-26
Last Version Date 2025-12-10
Entry Detail
PDB ID:
9LU3
Title:
LN1F9 Fab bound to Nipah Virus attachment (G) glycoprotein head domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycoprotein G
Gene (Uniprot):G
Chain IDs:A, D (auth: B)
Chain Length:441
Number of Molecules:2
Biological Source:Henipavirus nipahense
Polymer Type:polypeptide(L)
Molecule:mAb LN1F9 Fab heavy chain
Chain IDs:B (auth: H), E (auth: D)
Chain Length:234
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:mAb LN1F9 Fab light chain
Chain IDs:C (auth: L), F (auth: E)
Chain Length:214
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Antigenic landscape of Nipah virus attachment glycoprotein analysis reveals a protective immunodominant epitope across species.
Npj Vaccines ? ? ? (2025)
PMID: 41315143 DOI: 10.1038/s41541-025-01319-2

Abstact

Nipah virus (NiV) and Hendra virus (HeV), two highly pathogenic Henipaviruses (HNVs), pose a significant public health threat. The attachment glycoprotein (G) plays a crucial role in viral attachment and entry, making it an attractive target for vaccine and therapeutic antibody development. However, the antigenic landscape and neutralization sensitivity of the diverse HNV G proteins remain poorly defined. Here, we systematically characterize 27 monoclonal antibodies (mAbs) elicited by NiV G head (GH) nanoparticle-immunized mice. Among these, 25 mAbs exhibit neutralizing activity against two major NiV strains, NiV-Malaysia and NiV-Bangladesh, with five mAbs also cross-inhibiting HeV infection. Notably, mAbs from two distinct groups conferred complete protection to hamsters against lethal NiV-Malaysia challenge. Structural analysis of NiV GH in complex with representative Fabs reveals four non-overlapping epitopes, including two novel antigenic sites and one public protective epitope shared across species. MAbs targeting the novel sites bind to the top or side faces of G protein's β-propeller and inhibit viral infection by blocking either receptor engagement or membrane fusion. MAbs recognizing the public epitope block the receptor binding directly. Our study provides a comprehensive antigenic map of the NiV GH and offers new insights and opportunities for antibody-based therapies and rational vaccine development.

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Disease

Primary Citation of related structures
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