ISDA: 9LTV

Deposition Date 2025-02-06

Release Date 2025-10-01

Last Version Date 2025-10-01

Entry Detail

PDB ID:

9LTV

Keywords:

PHOTOSYNTHESIS

Title:

Cryo-EM structure of the Dinoroseobacter shibae RC-LH1 supercomplex with incomplete LH1 ring(State 2)

Biological Source:

Source Organism:

Dinoroseobacter shibae DFL 12 = DSM 16493 (Taxon ID: 398580)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein beta chain
Gene (Uniprot):pufB
Chain IDs:A (auth: 0), C (auth: 2), E (auth: 4), G (auth: 6), I (auth: 8), Q (auth: b), S (auth: d), U (auth: f), W (auth: h), Y (auth: j), AA (auth: l), CA (auth: n), EA (auth: p), GA (auth: x)
Chain Length:44
Number of Molecules:14
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ14 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein alpha chain
Gene (Uniprot):pufA
Chain IDs:B (auth: 1), D (auth: 3), F (auth: 5), H (auth: 7), J (auth: 9), P (auth: a), R (auth: c), T (auth: e), V (auth: g), X (auth: i), Z (auth: k), BA (auth: m), DA (auth: o), FA (auth: w)
Chain Length:51
Number of Molecules:14
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ15 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein LRC
Gene (Uniprot):Dshi_1314
Chain IDs:K (auth: A)
Chain Length:51
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LIU2

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center cytochrome c subunit
Gene (Uniprot):pufC
Chain IDs:L (auth: C)
Chain Length:357
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ18 Pfam ID:PF02276

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein H chain
Gene (Uniprot):puhA
Chain IDs:M (auth: H)
Chain Length:255
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ33 Pfam ID:PF03967, PF05239

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Gene (Uniprot):pufL
Chain IDs:N (auth: L)
Chain Length:44
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ16 Pfam ID:PF00124

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):pufM
Chain IDs:O (auth: M)
Chain Length:51
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ17 Pfam ID:PF00124

Ligand Molecules