ISDA: 9LTU

Deposition Date 2025-02-06

Release Date 2025-10-01

Last Version Date 2025-10-01

Entry Detail

PDB ID:

9LTU

Keywords:

PHOTOSYNTHESIS

Title:

Cryo-EM structure of the Dinoroseobacter shibae RC-LH1 supercomplex with incomplete LH1 ring(State 1)

Biological Source:

Source Organism:

Dinoroseobacter shibae DFL 12 = DSM 16493 (Taxon ID: 398580)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein beta chain
Gene (Uniprot):pufB
Chain IDs:A (auth: 0), C (auth: 8), J (auth: b), L (auth: d), N (auth: f), P (auth: h), R (auth: j), T (auth: l), V (auth: n), X (auth: p)
Chain Length:44
Number of Molecules:10
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ14 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein alpha chain
Gene (Uniprot):pufA
Chain IDs:B (auth: 7), D (auth: 9), I (auth: a), K (auth: c), M (auth: e), O (auth: g), Q (auth: i), S (auth: k), U (auth: m), W (auth: o)
Chain Length:51
Number of Molecules:10
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ15 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center cytochrome c subunit
Gene (Uniprot):pufC
Chain IDs:E (auth: C)
Chain Length:357
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ18 Pfam ID:PF02276

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein H chain
Gene (Uniprot):puhA
Chain IDs:F (auth: H)
Chain Length:255
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ33 Pfam ID:PF03967, PF05239

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Gene (Uniprot):pufL
Chain IDs:G (auth: L)
Chain Length:44
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ16 Pfam ID:PF00124

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):pufM
Chain IDs:H (auth: M)
Chain Length:325
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ17 Pfam ID:PF00124

Ligand Molecules