ISDA: 9LTS

Deposition Date 2025-02-06

Release Date 2025-10-01

Last Version Date 2025-10-01

Entry Detail

PDB ID:

9LTS

Keywords:

PHOTOSYNTHESIS

Title:

Cryo-EM structure of the Dinoroseobacter shibae RC-LH1 supercomplex

Biological Source:

Source Organism:

Dinoroseobacter shibae DFL 12 = DSM 16493 (Taxon ID: 398580)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein alpha chain
Gene (Uniprot):pufA
Chain IDs:B (auth: 1), D (auth: 5), F (auth: 3), H (auth: w), J (auth: u), L (auth: s), N (auth: q), P (auth: o), R (auth: m), T (auth: k), V (auth: g), X (auth: e), Z (auth: c), BA (auth: a), DA (auth: i), FA (auth: 7), LA (auth: 9)
Chain Length:51
Number of Molecules:17
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ15 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein beta chain
Gene (Uniprot):pufB
Chain IDs:C (auth: 2), E (auth: 6), G (auth: 4), I (auth: x), K (auth: v), M (auth: t), O (auth: r), Q (auth: p), S (auth: n), U (auth: l), W (auth: h), Y (auth: f), AA (auth: d), CA (auth: b), EA (auth: j), GA (auth: 8), MA (auth: 0)
Chain Length:44
Number of Molecules:17
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ14 Pfam ID:PF00556

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein LRC
Gene (Uniprot):Dshi_1314
Chain IDs:A
Chain Length:51
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LIU2

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center cytochrome c subunit
Gene (Uniprot):pufC
Chain IDs:HA (auth: C)
Chain Length:51
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ18 Pfam ID:PF02276

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein H chain
Gene (Uniprot):puhA
Chain IDs:IA (auth: H)
Chain Length:44
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ33 Pfam ID:PF03967, PF05239

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Gene (Uniprot):pufL
Chain IDs:JA (auth: L)
Chain Length:44
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ16 Pfam ID:PF00124

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):pufM
Chain IDs:KA (auth: M)
Chain Length:51
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493

UniProt ID:A8LQ17 Pfam ID:PF00124

Ligand Molecules