9LR5 image
Entry Detail
PDB ID:
9LR5
Keywords:
Title:
Crystal structure of Bacteroides thetaiotaomicron GH84 O-GlcNAcase D243N mutant
Biological Source:
PDB Version:
Deposition Date:
2025-01-29
Release Date:
2025-04-23
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:O-GlcNAcase BT_4395
Mutations:D243N
Chain IDs:A
Chain Length:723
Number of Molecules:1
Biological Source:Bacteroides thetaiotaomicron VPI-5482
Ligand Molecules
Primary Citation
beta 1,6-Selective Enzymatic N-Acetylglucosamination Catalyzed by the Family GH84 N-Acetyl-beta-D-glucosaminidase from Bacteroides thetaiotaomicron and its Glycosyl Acceptor Specificity.
Chem Asian J ? e202500142 e202500142 (2025)
PMID: 40195893 DOI: 10.1002/asia.202500142

Abstact

The chemoenzymatic synthesis of oligosaccharides presents a highly attractive methodology with significant potential for diverse applications, particularly through using various glycosidases. In this study, the O-glycan core 6 disaccharide moiety, GlcNAcβ1-6GalNAc, was successfully synthesized via enzymatic glycosylation using an N-acetyl-β-D-glucosaminidase from Bacteroides thetaiotaomicron (BtOGA), a member of glycoside hydrolase family 84 (GH84), alongside an N-acetyl-D-glucosamine oxazoline derivative (GlcNAc-oxa) as the glycosyl donor. Furthermore, an investigation into glycosyl acceptor recognition in BtOGA-catalyzed enzymatic glycosylation indicated that the presence of an aromatic group at the anomeric position and an axial hydroxy group at the 4-position of the saccharide moiety is crucial for effective recognition of BtOGA as a glycosyl acceptor. The protecting-group-free chemoenzymatic synthesis of the core 6 disaccharide moiety was achieved by integrating the direct synthesis of GlcNAc-oxa thorough Shoda activation method using a water-soluble dehydration condensing agent in an aqueous medium, followed by BtOGA-catalyzed enzymatic glycosylation.

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Primary Citation of related structures