9LPB image
Deposition Date 2025-01-24
Release Date 2025-05-07
Last Version Date 2025-06-11
Entry Detail
PDB ID:
9LPB
Title:
Terpene cyclase AriE mutant-D128A
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.87 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Terpene synthase
Gene (Uniprot):SAMN05421810_102118
Chain IDs:A
Chain Length:369
Number of Molecules:1
Biological Source:Amycolatopsis arida
Primary Citation
Crystal Structure and Catalytic Mechanism of the cis-Eunicellane Cyclase AriE.
Chemistry 31 e202500012 e202500012 (2025)
PMID: 40265331 DOI: 10.1002/chem.202500012

Abstact

Eunicellane diterpenoids, with over 360 known examples characterized by a cis- or trans-6/10-bicyclic carbon skeleton, exhibit diverse biological activities. To date, five eunicellane cyclases (ECs) have been reported: cis-ECs (Bnd4, CpDTS2 and EcTPS1) and trans-ECs (AlbS and MicA), yet the structural basis and molecular mechanisms governing their distinct cis- or trans-cyclization modes remain unsolved. Here, we present the crystal structure of a cis-EC AriE from Amycolatopsis arida, which catalyzes geranylgeranyl diphosphate to form cis-6/10-fused bicyclic benditerpe-2,6,15-triene (1) in aridacin biosynthesis. Through surface entropy reduction, we obtained the 1.87 Å resolution structure of AriED128A. Structure-guided mutagenesis identified W73 as a key regulatory hotspot controlling product diversity, with its variants generating diverse diterpene products. Y203A converted AriE into a highly specific (-)-(R)-cembrene A synthase. Our findings provide the first structural insights into this type of terpene synthase and demonstrate the feasibility of engineering EC variants for selective product formation.

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