9LKY image
Entry Detail
PDB ID:
9LKY
EMDB ID:
Keywords:
Title:
Dimer of CRL2-FEM1B bound with PLD6
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2025-01-17
Release Date:
2025-04-09
Method Details:
Experimental Method:
Resolution:
3.93 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cullin-2
Chain IDs:B (auth: A), J (auth: B)
Chain Length:764
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Elongin-C
Chain IDs:C, F (auth: G)
Chain Length:96
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:E3 ubiquitin-protein ligase RBX1, N-terminally processed
Chain IDs:D (auth: E), G (auth: I)
Chain Length:96
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Protein fem-1 homolog B
Chain IDs:E (auth: F), H (auth: J)
Chain Length:627
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Elongin-B
Chain IDs:I (auth: H), K (auth: D)
Chain Length:118
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Mitochondrial cardiolipin hydrolase
Chain IDs:A (auth: K)
Chain Length:204
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
TOM20-driven E3 ligase recruitment regulates mitochondrial dynamics through PLD6.
Nat.Chem.Biol. ? ? ? (2025)
PMID: 40263465 DOI: 10.1038/s41589-025-01894-4

Abstact

Mitochondrial homeostasis is maintained through complex regulatory mechanisms, including the balance of mitochondrial dynamics involving fusion and fission processes. A central player in this regulation is the ubiquitin-proteasome system (UPS), which controls the degradation of pivotal mitochondrial proteins. In this study, we identified cullin-RING E3 ligase 2 (CRL2) and its substrate receptor, FEM1B, as critical regulators of mitochondrial dynamics. Through proteomic analysis, we demonstrate here that FEM1B controls the turnover of PLD6, a key regulator of mitochondrial dynamics. Using structural and biochemical approaches, we show that FEM1B physically interacts with PLD6 and that this interaction is facilitated by the direct association of FEM1B with the mitochondrial import receptor TOM20. Ablation of FEM1B or disruption of the FEM1B-TOM20 interaction impairs PLD6 degradation and induces mitochondrial defects, phenocopying PLD6 overexpression. These findings underscore the importance of FEM1B in maintaining mitochondrial morphology and provide further mechanistic insights into how the UPS regulates mitochondrial homeostasis.

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Primary Citation of related structures