9LKP image
Deposition Date 2025-01-16
Release Date 2025-07-30
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9LKP
Keywords:
Title:
X-ray structure of Enterobacter cloaca transaldolase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.63 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fructose-6-phosphate aldolase
Gene (Uniprot):fsa
Chain IDs:A, B, C, D, E
Chain Length:241
Number of Molecules:5
Biological Source:Enterobacter cloacae
Primary Citation
Synthetic Study of 8- and 9-Carbon Sugars by Transaldolase.
J.Agric.Food Chem. 73 18914 18922 (2025)
PMID: 40668734 DOI: 10.1021/acs.jafc.5c05539

Abstact

In nature, higher carbon sugars composed of 7 or more carbons exist in limited quantities. Since some higher carbon sugars have attracted attention due to their biological activities, it is necessary to develop a strategy to synthesize them. Transaldolase catalyzes the transfer of three-carbon units from d-fructose-6-phosphate (donor) to d-erythrulose-4-phosphate (acceptor) to produce d-sedoheptulose-7-phosphate. If transaldolase can recognize nonphosphorylated monosaccharides as substrates, it can synthesize 8-carbon octuloses and 9-carbon nonuloses using nonphosphorylated pentoses and hexoses as acceptors, respectively. We performed biochemical and structural characterization of thermophilic Thermus thermophilus HB8 transaldolase and successfully synthesized octuloses and nonuloses using nonphosphorylated aldoses as acceptors: d-ribose (conversion rate of 74%), d-xylose (55%), l-arabinose (49%), l-lyxose (84%), d-allose (13%), d-galactose (56%), and l-altrose (71%). Products were identified by LC/MS and NMR spectroscopic analyses. X-ray structure of the enzyme showed that the wide and hydrophilic catalytic site facilitates the binding of nonphosphorylated aldoses as acceptors.

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