ISDA

Deposition Date 2025-01-16

Release Date 2025-06-18

Last Version Date 2025-06-18

Entry Detail

PDB ID:

9LK5

Keywords:

PHOTOSYNTHESIS

Title:

The structure of Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana

Biological Source:

Source Organism:

Arabidopsis thaliana (Taxon ID: 3702)

Host Organism:

Arabidopsis thaliana

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA
Chain IDs:A, W (auth: a)
Chain Length:353
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P83755 Pfam ID:PF00124

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:B, X (auth: b)
Chain Length:508
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P56777 Pfam ID:PF00421

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:C, Y (auth: c)
Chain Length:473
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P56778 Pfam ID:PF00421

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:D, Z (auth: d)
Chain Length:353
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P56761 Pfam ID:PF00124

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:E, AA (auth: e)
Chain Length:83
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P56779 Pfam ID:PF00283, PF00284

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:F, BA (auth: f)
Chain Length:39
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P62095 Pfam ID:PF00283

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein 2, chloroplastic
Gene (Uniprot):LHCB1.1
Chain IDs:G, N, CA (auth: g), RA (auth: n)
Chain Length:267
Number of Molecules:4
Biological Source:Arabidopsis thaliana

UniProt ID:P0CJ48 Pfam ID:PF00504

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:H, DA (auth: h)
Chain Length:73
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P56780 Pfam ID:PF00737

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:I, EA (auth: i)
Chain Length:36
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P62100 Pfam ID:PF02532

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein J
Gene (Uniprot):psbJ
Chain IDs:J, FA (auth: j)
Chain Length:40
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P56781 Pfam ID:PF01788

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:K, GA (auth: k)
Chain Length:61
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P56782 Pfam ID:PF02533

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:L, HA (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P60129 Pfam ID:PF02419

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:M, IA (auth: m)
Chain Length:34
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P62109 Pfam ID:PF05151

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 1-1, chloroplastic
Gene (Uniprot):PSBO1
Chain IDs:O, JA (auth: o)
Chain Length:332
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P23321 Pfam ID:PF01716

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein CP26, chloroplastic
Gene (Uniprot):LHCB5
Chain IDs:P (auth: S), LA (auth: s)
Chain Length:280
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:Q9XF89 Pfam ID:PF00504

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:Q (auth: T), MA (auth: t)
Chain Length:33
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P61839 Pfam ID:PF01405

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II 5 kDa protein, chloroplastic
Gene (Uniprot):PSBT
Chain IDs:R (auth: U), NA (auth: u)
Chain Length:103
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:Q39195

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center W protein, chloroplastic
Gene (Uniprot):PSBW
Chain IDs:S (auth: W), OA (auth: w)
Chain Length:133
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:Q39194 Pfam ID:PF07123

Protein Blast

Polymer Type:polypeptide(L)
Molecule:(thale cress) hypothetical protein
Gene (Uniprot):AT9943_LOCUS6465
Chain IDs:T (auth: X), PA (auth: x)
Chain Length:116
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:A0A7G2E9B1 Pfam ID:PF06596

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein 2.2, chloroplastic
Gene (Uniprot):LHCB2.2
Chain IDs:U (auth: Y), SA (auth: y)
Chain Length:265
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:Q9S7J7 Pfam ID:PF00504

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:V (auth: Z), QA (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:P56790 Pfam ID:PF01737

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein CP29.3, chloroplastic
Gene (Uniprot):LHCB4.3
Chain IDs:KA (auth: r), TA (auth: R)
Chain Length:286
Number of Molecules:2
Biological Source:Arabidopsis thaliana

UniProt ID:Q9S7W1 Pfam ID:PF00504

Ligand Molecules