9LHU image
Deposition Date 2025-01-13
Release Date 2025-07-09
Last Version Date 2025-07-09
Entry Detail
PDB ID:
9LHU
Keywords:
Title:
Crystal structure of an agose isomerase mutant 5 (TsT4Ease M5) from Thermotogota bacterium with Zn
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.43 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tagaturonate/fructuronate epimerase
Gene (Uniprot):uxaE
Chain IDs:A
Chain Length:507
Number of Molecules:1
Biological Source:Thermotogota bacterium
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP A SER modified residue
Ligand Molecules
Primary Citation
Protein Engineering of Tagatose 4-Epimerase for D-Tagatose Production.
J.Agric.Food Chem. 73 12353 12363 (2025)
PMID: 40350604 DOI: 10.1021/acs.jafc.5c01663

Abstact

D-Tagatose, a promising sugar substitute with various functional properties and commercial applications, can be enzymatically converted from D-fructose by tagatose 4-epimerase. The development of an efficient tagatose 4-epimerase that catalyzes the conversion of D-fructose into D-tagatose is essential to make the production technology of D-tagatose applicable. In this study, tagatose 4-epimerase from Thermotogae (TsT4Ease) was engineered through semi-rational design and directed evolution, resulting in a 2.8-fold improvement in catalytic activity compared to the wild type (WT). The production of D-tagatose reached 42 g/L in 2 h. Crystal structure analysis determined the structural features with a common (α/β)8-TIM barrel and a Zn2+-binding architecture at the active center. Subsequent molecular dynamics (MD) simulations revealed that the substitutions improved substrate binding energy and stabilized the active pocket. This study offers new insights into the structure-function relationship of TsT4Ease and provides a candidate tagatose 4-epimerase.

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Primary Citation of related structures