9LE7 image
Deposition Date 2025-01-07
Release Date 2025-10-08
Last Version Date 2025-10-08
Entry Detail
PDB ID:
9LE7
Keywords:
PHOTOSYNTHESIS
Title:
Coordinates of Cryo-EM structure of the Arabidopsis thaliana C4S4M4-type PSII supercomplex
Biological Source:
Source Organism:
Arabidopsis thaliana (Taxon ID: 3702)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9LE7 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):AN1_LOCUS9885, AT9943_LOCUS8470, C24_LOCUS9731
Chain IDs:A (auth: 5), C (auth: 7), TA (auth: 9), VA (auth: AA)
Chain Length:266
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:A0A654EYS2 Pfam ID:PF00504
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein 3, chloroplastic
Gene (Uniprot):LHCB3
Chain IDs:B (auth: 6), UA (auth: 0)
Chain Length:243
Number of Molecules:2
Biological Source:Arabidopsis thaliana
UniProt ID:Q9S7M0 Pfam ID:PF00504
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):AT9943_LOCUS1369
Chain IDs:D (auth: 8), WA (auth: AB)
Chain Length:212
Number of Molecules:2
Biological Source:Arabidopsis thaliana
UniProt ID:A0A178WK60 Pfam ID:PF00504
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA
Chain IDs:OA (auth: A), QA (auth: a), HC (auth: R), JC (auth: BD)
Chain Length:352
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P83755 Pfam ID:PF00124
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:E (auth: B), W (auth: b), XA (auth: v), PB (auth: BE)
Chain Length:508
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P56777 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:PA (auth: C), RA (auth: c), IC (auth: 1), KC (auth: BF)
Chain Length:459
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P56778 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:F (auth: D), X (auth: d), YA (auth: 2), QB (auth: BG)
Chain Length:352
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P56761 Pfam ID:PF00124
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:G (auth: E), Y (auth: e), ZA (auth: 3), RB (auth: BH)
Chain Length:83
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P56779 Pfam ID:PF00283, PF00284
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:H (auth: F), Z (auth: f), AB (auth: 4), SB (auth: BI)
Chain Length:39
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P62095 Pfam ID:PF00283
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein 1, chloroplastic
Gene (Uniprot):LHCB1.3
Chain IDs:I (auth: G), O (auth: N), U (auth: Y), AA (auth: g), GA (auth: n), MA (auth: y), BB (auth: Au), HB (auth: A2), NB (auth: BB), TB (auth: BJ), ZB (auth: BQ), FC (auth: Ba)
Chain Length:232
Number of Molecules:12
Biological Source:Arabidopsis thaliana
UniProt ID:P04778 Pfam ID:PF00504
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:J (auth: H), BA (auth: h), CB (auth: Av), UB (auth: BK)
Chain Length:72
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P56780 Pfam ID:PF00737
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:K (auth: I), CA (auth: i), DB (auth: Aw), VB (auth: BL)
Chain Length:36
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P62100 Pfam ID:PF02532
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:L (auth: K), DA (auth: k), EB (auth: Ay), WB (auth: BN)
Chain Length:37
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P56782 Pfam ID:PF02533
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:M (auth: L), EA (auth: l), FB (auth: Az), XB (auth: BO)
Chain Length:38
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P60129 Pfam ID:PF02419
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:N (auth: M), FA (auth: m), GB (auth: A1), YB (auth: BP)
Chain Length:34
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P62109 Pfam ID:PF05151
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein CP26, chloroplastic
Gene (Uniprot):LHCB5
Chain IDs:P (auth: S), HA (auth: s), IB (auth: A6), AC (auth: BV)
Chain Length:232
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:Q9XF89 Pfam ID:PF00504
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:Q (auth: T), IA (auth: t), JB (auth: A7), BC (auth: BW)
Chain Length:33
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P61839 Pfam ID:PF01405
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II 5 kDa protein, chloroplastic
Gene (Uniprot):PSBT
Chain IDs:R (auth: U), JA (auth: u), KB (auth: A8), CC (auth: BX)
Chain Length:28
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:Q39195
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center W protein, chloroplastic
Gene (Uniprot):PSBW
Chain IDs:S (auth: W), KA (auth: w), LB (auth: A0), DC (auth: BY)
Chain Length:54
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:Q39194 Pfam ID:PF07123
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:(thale cress) hypothetical protein
Gene (Uniprot):AT9943_LOCUS6465
Chain IDs:T (auth: X), LA (auth: x), MB (auth: BA), EC (auth: BZ)
Chain Length:42
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:A0A7G2E9B1 Pfam ID:PF06596
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:V (auth: Z), NA (auth: z), OB (auth: BC), GC (auth: Bb)
Chain Length:62
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:P56790 Pfam ID:PF01737
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein CP29.1, chloroplastic
Gene (Uniprot):LHCB4.1
Chain IDs:SA (auth: r), LC (auth: BU)
Chain Length:250
Number of Molecules:2
Biological Source:Arabidopsis thaliana
UniProt ID:Q07473 Pfam ID:PF00504
Ligand Molecules
BCR
BCT
CHL
CLA
DGD
FE2
HEM
LHG
LMG
LUT
NEX
OEX
PHO
PL9
SQD
XAT
Primary Citation
Coordinates of Cryo-EM structure of the Arabidopsis thaliana C2S2M2-type PSII supercomplex
To Be Published ? ? ? (?)
Primary Citation of related structures
9LE7
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