ISDA: 9LDG

Deposition Date 2025-01-06

Release Date 2025-11-12

Last Version Date 2025-11-12

Entry Detail

PDB ID:

9LDG

Keywords:

TRANSFERASE/DNA

Title:

The structure of TkoKptA/DNA/Appr>P complex-B

Biological Source:

Source Organism:

Thermococcus kodakarensis (Taxon ID: 69014)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.40 Å

R-Value Free:

0.28

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

P 1 21 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Probable RNA 2'-phosphotransferase
Gene (Uniprot):kptA
Chain IDs:A, B
Chain Length:180
Number of Molecules:2
Biological Source:Thermococcus kodakarensis

UniProt ID:Q5JFX3 Pfam ID:PF01885

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
Chain IDs:C, D
Chain Length:10
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules