9LDD image
Deposition Date 2025-01-05
Release Date 2025-11-12
Last Version Date 2025-11-12
Entry Detail
PDB ID:
9LDD
Keywords:
TRANSFERASE/DNA
Title:
The structure of TkoKptA/DNA/ADPR complex-A*
Biological Source:
Source Organism:
Thermococcus kodakarensis (Taxon ID: 69014)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.82 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 41 21 2
9LDD validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Probable RNA 2'-phosphotransferase
Gene (Uniprot):kptA
Chain IDs:A
Chain Length:180
Number of Molecules:1
Biological Source:Thermococcus kodakarensis
UniProt ID:Q5JFX3 Pfam ID:PF01885
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
Chain IDs:B
Chain Length:10
Number of Molecules:1
Biological Source:synthetic construct
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
A1EJT A LYS modified residue
Ligand Molecules
GOL
Primary Citation
The structure of TkoKptA/DNA/ADPR complex-A*
To Be Published ? ? ? (?)
Primary Citation of related structures
9LDD
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