9LDA image
Deposition Date 2025-01-05
Release Date 2025-11-12
Last Version Date 2025-11-12
Entry Detail
PDB ID:
9LDA
Keywords:
TRANSFERASE/DNA
Title:
The complex structure of K63A/5'-p-ADPR-DNA
Biological Source:
Source Organism:
Thermococcus kodakarensis KOD1 (Taxon ID: 69014)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.33 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 41 21 2
9LDA validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Probable RNA 2'-phosphotransferase
Gene (Uniprot):kptA
Mutagens:K63A
Chain IDs:A
Chain Length:180
Number of Molecules:1
Biological Source:Thermococcus kodakarensis KOD1
UniProt ID:Q5JFX3 Pfam ID:PF01885
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
Chain IDs:B
Chain Length:10
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
A1EJJ
GOL
IMD
Primary Citation
The complex structure of K63A/5'-p-ADPR-DNA
To Be Published ? ? ? (?)
Primary Citation of related structures
9LDA
Feedback Form
Name
Email
Institute
Feedback