9LD7 image
Deposition Date 2025-01-05
Release Date 2025-04-16
Last Version Date 2025-10-29
Entry Detail
PDB ID:
9LD7
Keywords:
Title:
The capsid of mature phage N4
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):56
Chain IDs:A, D (auth: H), E (auth: B), F (auth: J), G (auth: C), H (auth: D), I, J (auth: F), K
Chain Length:401
Number of Molecules:9
Biological Source:Enterobacteria phage N4
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:32 kDa protein
Chain IDs:B (auth: E), C (auth: G), L
Chain Length:279
Number of Molecules:3
Biological Source:Enterobacteria phage N4
Ligand Molecules
Primary Citation
Asymmetric structure of podophage N4 from the Schitoviridae family reveals a type of tube-sheath short-tail architecture.
Structure 33 1250 1262.e2 (2025)
PMID: 40318628 DOI: 10.1016/j.str.2025.04.008

Abstact

The tails of the majority of reported podophages are typically composed of an adaptor, a nozzle, and a needle, and flanked by six or twelve fibers. However, the Schitoviridae family, as represented by podophage N4, exhibits a different tail architecture that remains poorly understood. In this study, we employed cryoelectron microscopy (cryo-EM) to determine the atomic structures of mature and empty podophage N4 particles. The N4 tail, which is connected to the head by a portal and flanked by 12 fibers, comprises an adaptor, a 12-fold extended tail tube encircled by a 6-fold tail sheath, and a plug. The extended tail sheath is composed of two proteins, gp65 and gp64. Furthermore, we identified two distinct tail conformations in the mature podophage N4. Our structures provide insights into the mechanisms of ejection and early transcription of podophage N4, as well as for N4-like phages and CrAssphages.

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