ISDA: 9LD6

Deposition Date 2025-01-05

Release Date 2025-11-12

Last Version Date 2025-11-12

Entry Detail

PDB ID:

9LD6

Keywords:

TRANSFERASE/DNA

Title:

The complex structure of TkoKptA/DNA/NAD+

Biological Source:

Source Organism(s):

Thermococcus kodakarensis (Taxon ID: 69014)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.01 Å

R-Value Free:

0.27

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Probable RNA 2'-phosphotransferase
Gene (Uniprot):kptA
Chain IDs:A
Chain Length:180
Number of Molecules:1
Biological Source:Thermococcus kodakarensis

UniProt ID:Q5JFX3 Pfam ID:PF01885

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
Chain IDs:B (auth: C)
Chain Length:10
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules