9LBN image
Deposition Date 2025-01-03
Release Date 2025-05-07
Last Version Date 2025-05-07
Entry Detail
PDB ID:
9LBN
Keywords:
Title:
The composite cryo-EM structure of the head-to-tail connector and head-proximal tail components of bacteriophage phiXacJX1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:portal protein gp1
Chain IDs:A (auth: H), G (auth: h)
Chain Length:431
Number of Molecules:2
Biological Source:Xanthomonas phage phiXacJX1
Polymer Type:polypeptide(L)
Molecule:adaptor protein gp5
Chain IDs:B (auth: I), H (auth: i)
Chain Length:111
Number of Molecules:2
Biological Source:Xanthomonas phage phiXacJX1
Polymer Type:polypeptide(L)
Molecule:stopper protein gp6
Chain IDs:C (auth: J)
Chain Length:124
Number of Molecules:1
Biological Source:Xanthomonas phage phiXacJX1
Polymer Type:polypeptide(L)
Molecule:terminator protein gp8
Chain IDs:D (auth: K)
Chain Length:118
Number of Molecules:1
Biological Source:Xanthomonas phage phiXacJX1
Polymer Type:polypeptide(L)
Molecule:tube protein gp9
Chain IDs:E (auth: L), F (auth: M)
Chain Length:212
Number of Molecules:2
Biological Source:Xanthomonas phage phiXacJX1
Ligand Molecules
Primary Citation
Cryo-EM structures of a Xanthomonas phage: Insights into viral architecture and implications for the model phage HK97.
Structure ? ? ? (2025)
PMID: 40273907 DOI: 10.1016/j.str.2025.03.013

Abstact

Xanthomonas bacteria are responsible for disease outbreaks in several hundred plant species, causing significant economic losses. Xanthomonas phages have emerged as a promising biocontrol strategy in managing various important plant diseases caused by Xanthomonas bacteria. However, structural information for Xanthomonas phages has remained limited so far. Here, we present high-resolution cryo-electron microscopy (cryo-EM) structures of the Xanthomonas citri phage ΦXacJX1 from siphoviruses. These structures include atomic models for the head, head-to-tail connector and head-proximal portion of the tail. ΦXacJX1's head and head-to-tail connector components show significant protein sequence and structural homology with those of the model siphophage HK97. However, the in-situ structures of head-to-tail connector of phage HK97 remain unavailable. The presented structures of phage ΦXacJX1 enhance our understanding of Xanthomonas phages and the mature virion of phage HK97. They provide a valuable framework for future structural and functional studies on both Xanthomonas phages and phage HK97.

Legend

Protein

Chemical

Disease

Primary Citation of related structures