9LBM image
Entry Detail
PDB ID:
9LBM
EMDB ID:
Keywords:
Title:
Cryo-EM structure of bacteriophage phiXacJX1 capsid
Biological Source:
PDB Version:
Deposition Date:
2025-01-03
Release Date:
2025-05-07
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:major capsid protein gp3
Chain IDs:A (auth: F), B (auth: G), C (auth: B), D (auth: A), E (auth: C), F (auth: D), G (auth: E)
Chain Length:394
Number of Molecules:7
Biological Source:Xanthomonas phage phiXacJX1
Ligand Molecules
Primary Citation
Cryo-EM structures of a Xanthomonas phage: Insights into viral architecture and implications for the model phage HK97.
Structure ? ? ? (2025)
PMID: 40273907 DOI: 10.1016/j.str.2025.03.013

Abstact

Xanthomonas bacteria are responsible for disease outbreaks in several hundred plant species, causing significant economic losses. Xanthomonas phages have emerged as a promising biocontrol strategy in managing various important plant diseases caused by Xanthomonas bacteria. However, structural information for Xanthomonas phages has remained limited so far. Here, we present high-resolution cryo-electron microscopy (cryo-EM) structures of the Xanthomonas citri phage ΦXacJX1 from siphoviruses. These structures include atomic models for the head, head-to-tail connector and head-proximal portion of the tail. ΦXacJX1's head and head-to-tail connector components show significant protein sequence and structural homology with those of the model siphophage HK97. However, the in-situ structures of head-to-tail connector of phage HK97 remain unavailable. The presented structures of phage ΦXacJX1 enhance our understanding of Xanthomonas phages and the mature virion of phage HK97. They provide a valuable framework for future structural and functional studies on both Xanthomonas phages and phage HK97.

Legend

Protein

Chemical

Disease

Primary Citation of related structures