9L8U image
Deposition Date 2024-12-28
Release Date 2025-12-31
Last Version Date 2026-01-28
Entry Detail
PDB ID:
9L8U
Title:
Cryo-EM structure of ASFV DNA polymerase in a DNA replication state
Biological Source:
Source Organism(s):
Asfarviridae (Taxon ID: 137992)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.53 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA polymerase
Gene (Uniprot):G1211R
Chain IDs:A
Chain Length:992
Number of Molecules:1
Biological Source:Asfarviridae
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3')
Chain IDs:B
Chain Length:16
Number of Molecules:1
Biological Source:Asfarviridae
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*A)-3')
Chain IDs:C
Chain Length:11
Number of Molecules:1
Biological Source:Asfarviridae
Primary Citation
Structural basis for DNA replication by the African swine fever virus polymerase.
Iscience 28 114155 114155 (2025)
PMID: 41438038 DOI: 10.1016/j.isci.2025.114155

Abstact

African swine fever virus (ASFV) devastates swine herds and lacks widely available antivirals. We show that the ASFV DNA polymerase beta (Pol β; gene G1211R) localizes to viral replication factories and is required for viral replication. Cryo-electron microscopy structures of Pol β in apo and double-stranded DNA (dsDNA)-bound states reveal pronounced conformational flexibility that enables transitions between functional states. Binding to dsDNA promotes higher-order oligomerization that is essential for catalytic activity, as demonstrated by structure-guided mutagenesis and biochemical assays. These findings define the structural basis of ASFV genome synthesis, highlight the functional significance of Pol β during viral replication, and provide a framework for polymerase-targeted antiviral discovery.

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Disease

Primary Citation of related structures
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