9L7M image
Entry Detail
PDB ID:
9L7M
EMDB ID:
Keywords:
Title:
Nucleotide-free kinesin-1 motor domain bound to the microtubule
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-12-26
Release Date:
2025-04-23
Method Details:
Experimental Method:
Resolution:
3.48 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tubulin alpha-1B chain
Chain IDs:A, C
Chain Length:451
Number of Molecules:2
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Description:Tubulin beta chain
Chain IDs:B, D
Chain Length:445
Number of Molecules:2
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Description:Kinesin-1 heavy chain
Chain IDs:E (auth: K)
Chain Length:357
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Tension-induced suppression of allosteric conformational changes coordinates kinesin-1 stepping.
J.Cell Biol. 224 ? ? (2025)
PMID: 40298806 DOI: 10.1083/jcb.202501253

Abstact

Kinesin-1 walks along microtubules by alternating ATP hydrolysis and movement of its two motor domains ("head"). The detached head preferentially binds to the forward tubulin-binding site after ATP binds to the microtubule-bound head, but the mechanism preventing premature microtubule binding while the partner head awaits ATP remains unknown. Here, we examined the role of the neck linker, the segment connecting two heads, in this mechanism. Structural analyses of the nucleotide-free head revealed a bulge just ahead of the neck linker's base, creating an asymmetric constraint on its mobility. While the neck linker can stretch freely backward, it must navigate around this bulge to extend forward. We hypothesized that increased neck linker tension suppresses premature binding of the tethered head, which was supported by molecular dynamics simulations and single-molecule fluorescence assays. These findings demonstrate a tension-dependent allosteric mechanism that coordinates the movement of two heads, where neck linker tension modulates the allosteric conformational changes rather than directly affecting the nucleotide state.

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Primary Citation of related structures