ISDA: 9L5V

Deposition Date 2024-12-23

Release Date 2025-11-26

Last Version Date 2025-11-26

Entry Detail

PDB ID:

9L5V

Keywords:

PHOTOSYNTHESIS

Title:

cryo-EM structure of PSII-ACPII from Rhodomonas sp. NIES-2332

Biological Source:

Source Organism:

Rhodomonas sp. NIES-2332 (Taxon ID: 2867507)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.17 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:ACPII-1
Chain IDs:GA (auth: 1), HA (auth: N)
Chain Length:234
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:ACPII-2
Chain IDs:IA (auth: 2), OA (auth: O)
Chain Length:215
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:ACPII-3
Chain IDs:JA (auth: 3), PA (auth: P)
Chain Length:182
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:ACPII-4
Chain IDs:KA (auth: 4), QA (auth: Q)
Chain Length:200
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:ACPII-5
Chain IDs:LA (auth: 5), RA (auth: R)
Chain Length:228
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:ACPII-6
Chain IDs:MA (auth: 6), SA (auth: S)
Chain Length:174
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Chain IDs:A, Q (auth: a)
Chain Length:374
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Chain IDs:B, R (auth: b)
Chain Length:508
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Chain IDs:C, S (auth: c)
Chain Length:486
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Chain IDs:D, T (auth: d)
Chain Length:351
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Chain IDs:E, U (auth: e)
Chain Length:84
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Chain IDs:F, V (auth: f)
Chain Length:42
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Psb-gama_linker
Chain IDs:NA (auth: G)
Chain Length:292
Number of Molecules:1
Biological Source:Rhodomonas sp. NIES-2332

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:G (auth: H), W (auth: h)
Chain Length:67
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

UniProt ID:A6MW35 Pfam ID:PF00737

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Chain IDs:H (auth: I), X (auth: i)
Chain Length:38
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Chain IDs:I (auth: K), Y (auth: k)
Chain Length:45
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Chain IDs:J (auth: L), Z (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II protein M
Chain IDs:K (auth: M), AA (auth: m)
Chain Length:118
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Chain IDs:L (auth: T), BA (auth: t)
Chain Length:32
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II protein W
Chain IDs:M (auth: W), CA (auth: w)
Chain Length:121
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center X protein
Chain IDs:N (auth: X), DA (auth: x)
Chain Length:39
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Psb30
Chain IDs:O (auth: Y), EA (auth: y)
Chain Length:34
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Chain IDs:P (auth: Z), FA (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Rhodomonas sp. NIES-2332

Polymer Type:polypeptide(L)
Molecule:Psb-gama_linker
Chain IDs:TA (auth: g)
Chain Length:292
Number of Molecules:1
Biological Source:Rhodomonas sp. NIES-2332

Ligand Molecules