9L3P image
Deposition Date 2024-12-19
Release Date 2025-06-25
Last Version Date 2025-06-25
Entry Detail
PDB ID:
9L3P
Keywords:
Title:
Crystal structure of endo-processive xyloglucanase Xeg5A E285A from Aspergillus oryzae with GLLX/L
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.34 Å
R-Value Free:
0.21
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycoside hydrolase superfamily
Gene (Uniprot):Ao3042_05083
Mutations:E285A
Chain IDs:A
Chain Length:648
Number of Molecules:1
Biological Source:Aspergillus oryzae RIB40
Primary Citation
Structural insights into substrate recognition of tri-modular xyloglucanase from Aspergillus oryzae.
J.Struct.Biol. 217 108213 108213 (2025)
PMID: 40414580 DOI: 10.1016/j.jsb.2025.108213

Abstact

Xeg5A from Aspergillus oryzae belongs to glycoside hydrolase family 5 subfamily 4. This enzyme has been characterized as a xyloglucan-specific endo-β-1,4-glucanase (xyloglucanase) that cleaves the main chain of xyloglucan at both unbranched and xylosylated glucosyl residues in an endo-processive mode of action. X-ray crystallography revealed that Xeg5A is a tri-modular enzyme composed of a catalytic, an Ig-like, and a C-terminal CBM46-like domains. Xeg5A structures complexed with branched xyloglucan oligosaccharides at subsites -4 to +4 showed that the recognition of xyloglucan side-chain moieties is important for Xeg5A activity. The crystal structure also provided structural insights into the role of the CBM46-like domain in contributing to regiospecificity and, possibly, processivity.

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