9L3E image
Deposition Date 2024-12-18
Release Date 2025-08-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9L3E
Keywords:
Title:
Structure of GAPDH complexed with Leu-F
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.77 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glyceraldehyde-3-phosphate dehydrogenase
Gene (Uniprot):GAPDH
Chain IDs:A (auth: O), B (auth: P), C (auth: R), D (auth: Q)
Chain Length:336
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Plant defense-directed discovery of a natural anti-psoriasis agent targeting GAPDH.
Sci Adv 11 eadw2578 eadw2578 (2025)
PMID: 40712011 DOI: 10.1126/sciadv.adw2578

Abstact

Elucidating the ecological functions of natural products in plant adaptive mechanisms is an emerging means of discovering lead compounds. Here, we show an undescribed plant glandular trichome-specific defense sesterterpenoid, leucosceptrine F (leu-F), exhibiting potent anti-inflammatory activity by modulating both innate and adaptive immune responses. Leu-F irreversibly binds to glyceraldehyde-3-phosphate dehydrogenase (GAPDH), a cross-kingdom glycolytic enzyme and a promising therapeutic target in autoimmune diseases. Crystal structure of the GAPDH-leu-F complex reveals the formation of a covalent bond between leu-F and the Cys152 residue. Leu-F notably attenuated glycolysis and concurrently diminished GAPDH-mediated stabilization of activated protein kinase B (AKT). Both leu-F and the total sesterterpenoid extract of Leucosceptrum canum demonstrated notable therapeutic efficacy and safety in mouse models of psoriasis and experimental autoimmune encephalomyelitis. This study underscores leu-F as a promising lead compound for autoimmune disease treatment and provides a compelling example of drug discovery inspired by chemical ecology.

Legend

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Chemical

Disease

Primary Citation of related structures
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