9L22 image
Entry Detail
PDB ID:
9L22
EMDB ID:
EMD-62766
Keywords:
GENE REGULATION
Title:
hDEK-nucleosome complex (conformation 2)
Biological Source:
Source Organism:
Homo sapiens
Host Organism:
Escherichia coli
PDB Version:
Deposition Date:
2024-12-16
Release Date:
2025-05-07
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9L22 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Histone H3.3
Chain IDs:A, E
Chain Length:135
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P84243 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Description:Histone H4
Chain IDs:B, F
Chain Length:102
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P62805 Pfam ID:PF15511
Protein Blast
Polymer Type:polypeptide(L)
Description:Histone H2A type 1-B/E
Chain IDs:C, G
Chain Length:129
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P04908 Pfam ID:PF00125, PF16211
Protein Blast
Polymer Type:polypeptide(L)
Description:Histone H2B type 1-J
Chain IDs:D, H
Chain Length:125
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P06899 Pfam ID:PF00125
Polymer Type:polydeoxyribonucleotide
Description:601 DNA_R (189-MER)
Chain IDs:I
Chain Length:189
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:601 DNA (189-MER)
Chain IDs:J
Chain Length:189
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Description:Protein DEK
Chain IDs:K, L
Chain Length:375
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P35659 Pfam ID:PF08766
Ligand Molecules
UNX
Primary Citation
DEK-nucleosome structure shows DEK modulates H3K27me3 and stem cell fate
Nat.Struct.Mol.Biol. ? ? ? (2025)
DOI: 10.1038/s41594-025-01559-9
Primary Citation of related structures
9L22