9KYD image
Deposition Date 2024-12-08
Release Date 2025-10-29
Last Version Date 2025-11-26
Entry Detail
PDB ID:
9KYD
Keywords:
Title:
PltBd1 homopentameric holotoxin from E. coli
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.05 Å
Aggregation State:
3D ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pertussis toxin-like subunit ArtA
Gene (Uniprot):artA
Chain IDs:A (auth: B)
Chain Length:243
Number of Molecules:1
Biological Source:Salmonella enterica subsp. diarizonae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Subtilase cytotoxin subunit B
Gene (Uniprot):DLB95_17855, G0D47_10640, G2916_21295, G2997_22655, G3A00_19435, GB016_19580, GB034_20695, GB088_22290, GB236_21910, GB246_19595, GB337_19745, GB348_18485, GBS30_22120, GBV97_20140, GBW00_19905, GBX19_22045, GBX62_11520, GBY11_22705, GBY15_15095, GBY49_11215, GBZ10_19965, GBZ12_10545, GBZ37_18525, GBZ41_22400, PG27_18440
Chain IDs:B (auth: C), C (auth: D), D (auth: E), E (auth: F), F (auth: G)
Chain Length:150
Number of Molecules:5
Biological Source:Salmonella enterica subsp. diarizonae
Ligand Molecules
Primary Citation
Functional synergy of heteropentameric B subunits underlies virulence in a Salmonella A2B5 toxin.
Plos Pathog. 21 e1013684 e1013684 (2025)
PMID: 41223210 DOI: 10.1371/journal.ppat.1013684

Abstact

AB5-type toxins are critical virulence factors in bacterial pathogenesis. Despite the identification of various B subunits in AB5 toxins across different pathogens, their assembly mechanisms and biological significance remain poorly understood. In this study, we identified and characterized a typhoid toxin-like A2B5 toxin, designated diarizonae toxin (DiaT), as a key virulence factor in Salmonella diarizonae. The DiaT genomic islet encodes two distinct B subunits, PltBd1 and PltBd2, which exhibit unique functional roles. Through genetic and functional analyses, we demonstrate that the heteropentameric assembly of PltBd1 and PltBd2 is essential for cytotoxicity, with our data suggesting PltBd1 facilitates toxin secretion and PltBd2 mediates host cell targeting. Cryo-EM structural analysis of endogenously expressed DiaT reveals a heteropentameric holotoxin with a 3:2 stoichiometry of PltBd1 to PltBd2, potentially stabilized by the PltA subunit. These findings uncover a novel assembly mechanism and synergistic functionality between distinct B subunits, advancing our understanding of the evolutionary diversity and functional complexity of AB5 toxins. This work provides new insights into bacterial pathogenesis and highlights potential targets for therapeutic intervention.

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Primary Citation of related structures
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