ISDA: 9KVT

Deposition Date 2024-12-05

Release Date 2025-12-10

Last Version Date 2025-12-10

Entry Detail

PDB ID:

9KVT

Keywords:

VIRAL PROTEIN/IMMUNE SYSTEM

Title:

Cryo-EM structure of SARS-CoV-2 BA.2 spike protein in complex with triple-nAb 8H12, 3E2 and 1C4 (local refinement)

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Mus musculus (Taxon ID: 10090)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.90 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:The heavy chain of 8H12
Chain IDs:D (auth: A)
Chain Length:119
Number of Molecules:1
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:The light chain of 8H12
Chain IDs:C (auth: B)
Chain Length:107
Number of Molecules:1
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:The heavy chain of 1C4
Chain IDs:G (auth: C)
Chain Length:119
Number of Molecules:1
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:The light chain of 1C4
Chain IDs:F (auth: D)
Chain Length:107
Number of Molecules:1
Biological Source:Mus musculus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:E (auth: G)
Chain Length:194
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF09408

Polymer Type:polypeptide(L)
Molecule:The heavy chain of 3E2
Chain IDs:B (auth: H)
Chain Length:121
Number of Molecules:1
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:The light chain of 3E2
Chain IDs:A (auth: L)
Chain Length:104
Number of Molecules:1
Biological Source:Mus musculus

Ligand Molecules

Primary Citation

Cryo-EM structure of SARS-CoV-2 BA.2 spike protein in complex with triple-nAb 8H12, 3E2 and 1C4 (local refinement)

Sun, H, Jiang, Y, Li, S, Zheng, Q.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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