9KV7 image
Deposition Date 2024-12-04
Release Date 2025-10-15
Last Version Date 2025-10-15
Entry Detail
PDB ID:
9KV7
Keywords:
Title:
Cryo-EM structure of mouse RIPK1-DD filament
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.02 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Receptor-interacting serine/threonine-protein kinase 1
Gene (Uniprot):Ripk1
Chain IDs:A, B (auth: G), C (auth: H), D (auth: I), E (auth: J), F (auth: K), G (auth: B), H (auth: C), I (auth: D), J (auth: E), K (auth: F), L, M (auth: P), N (auth: R), O (auth: V), P (auth: X), Q (auth: M), R (auth: Q), S, T (auth: U), U (auth: W), V (auth: N), W (auth: O)
Chain Length:120
Number of Molecules:23
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
RIPK1 senses S-adenosylmethionine scarcity to drive cell death and inflammation.
Cell Metab. 37 1732 1749.e9 (2025)
PMID: 40570842 DOI: 10.1016/j.cmet.2025.05.014

Abstact

The capacity of cells to sense and respond to nutrient availability is essential for metabolic homeostasis. Failure in this process may cause cell death and associated diseases. While nutrient sensing in metabolic pathways is well understood, the mechanisms linking nutrient signals to cell death remain unclear. Here, we show that RIPK1, a key mediator of cell death and inflammation, senses methionine and its metabolite, S-adenosylmethionine (SAM), to dictate cell survival and death. SAM-mediated symmetrical dimethylation at RIPK1 Arg606 by PRMT5 functions as a physiological protective brake against RIPK1 activation. Metabolic perturbations, such as methionine restriction or disrupted one-carbon flux, reduce SAM levels and unmask Arg606, promoting RIPK1 self-association and trans-activation, thereby triggering apoptosis and inflammation. Thus, RIPK1 is a physiological SAM sensor linking methionine and one-carbon metabolism to the control of life-or-death decisions. Our findings suggest that RIPK1 could be a potential target for diseases associated with disrupted SAM availability.

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Disease

Primary Citation of related structures