9KTM image
Deposition Date 2024-12-02
Release Date 2025-06-11
Last Version Date 2025-07-23
Entry Detail
PDB ID:
9KTM
Title:
Alpha-hemolysin heptameric pre-pore state bound to 10:PC lipid chains derived from 10:0 PC liposomes.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-hemolysin
Gene (Uniprot):hly
Chain IDs:A (auth: G), B (auth: A), C (auth: B), D (auth: C), E (auth: D), F (auth: E), G (auth: F)
Chain Length:293
Number of Molecules:7
Biological Source:Staphylococcus aureus
Ligand Molecules
Primary Citation
Structural insights into pre-pore intermediates of alpha-hemolysin in the lipidic environment.
Nat Commun 16 6348 6348 (2025)
PMID: 40640160 DOI: 10.1038/s41467-025-61741-x

Abstact

The infectious microbe Staphylococcus aureus releases an array of cytotoxic pore-forming toxins (PFTs) that severely damage the cell membrane during bacterial infection. However, the interaction interfaces between the host cell membrane and toxin were hardly explored. So far, there are no pore, and intermediate structures of these toxins available in the presence of bio-membrane, which could elucidate the pore-forming mechanism. Here, we investigate the structure of different conformational states of this alpha-hemolysin (α-HL/Hla), a β-PFT in lipidic environment using single-particle cryo-EM. Additionally, we explore lipid destabilization by the toxin, using single-molecule imaging, confocal imaging, and validation of lipid-protein interactions using mutational studies. We elucidate eight cryo-EM structures of wildtype α-HL with various liposomes, which are composed of either 10:0 PC or Egg-PC/Cholesterol or Egg-PC/Sphingomyelin or 10:0 PC/Sphingomyelin. Our structural and biophysical studies confirm that different chain lengths and various membrane compositions facilitate the formation of intermediate pre-pores and complete pore species. We also demonstrate that the percentage of pre-pore population increases due to sphingomyelin-induced membrane rigidity. Altogether, this study unveils the structure-function analysis of the pre-pore to pore transition of wildtype α-HL during its crosstalk with the lipid membrane.

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Primary Citation of related structures