ISDA

Deposition Date 2024-11-30

Release Date 2025-05-21

Last Version Date 2025-05-21

Entry Detail

PDB ID:

9KSN

Keywords:

OXIDOREDUCTASE

Title:

Crystal structure of meso-diaminopimelate dehydrogenase from Bacillus thermozeamaize mutant M9 complexed with NADP+

Biological Source:

Source Organism:

Bacillus thermozeamaize (Taxon ID: 230954)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.65 Å

R-Value Free:

0.23

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 43 21 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Meso-diaminopimelate D-dehydrogenase
Gene (Uniprot):BAA01_00405
Chain IDs:A, B, C
Chain Length:347
Number of Molecules:3
Biological Source:Bacillus thermozeamaize

UniProt ID:A0A1Y3PXT7 Pfam ID:PF01408, PF16654

Ligand Molecules

ACY

IMD

NAP

OXM

Primary Citation

An Engineered meso-Diaminopimelate Dehydrogenase Enables the Biocatalytic Synthesis of Bulky beta-Substituted d-Amino Acids

Wei, Y, Zheng, Y.C, Liu, H.P, Geng, Q, Wang, Z, Wang, Y.Q, Yu, H.L, Xu, J.H, Zhang, Z.J.Show

Acs Catalysis ? 7720 7730 (2025)

DOI: 10.1021/acscatal.5c01214

Primary Citation of related structures