9KQP image
Deposition Date 2024-11-26
Release Date 2025-02-26
Last Version Date 2025-02-26
Entry Detail
PDB ID:
9KQP
Keywords:
Title:
PSI-LHCI supercomplex binding with 10 Lhcas from C. subellipsoidea
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.92 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic/Lhca2
Chain IDs:U (auth: 2)
Chain Length:273
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COCSUDRAFT_37969
Chain IDs:N (auth: 3)
Chain Length:246
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COCSUDRAFT_52367
Chain IDs:V (auth: 4)
Chain Length:246
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COCSUDRAFT_61250
Chain IDs:W (auth: 5)
Chain Length:274
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COCSUDRAFT_46127
Chain IDs:X (auth: 6)
Chain Length:272
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COCSUDRAFT_25284
Chain IDs:O (auth: 7)
Chain Length:259
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COCSUDRAFT_48543
Chain IDs:P (auth: 8)
Chain Length:255
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COCSUDRAFT_44136
Chain IDs:Q (auth: 9)
Chain Length:230
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:A
Chain Length:229
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:B
Chain Length:734
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C
Chain Length:81
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II, chloroplastic
Gene (Uniprot):COCSUDRAFT_24389
Chain IDs:D
Chain Length:192
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction centre subunit IV/PsaE
Gene (Uniprot):COCSUDRAFT_18458
Chain IDs:E
Chain Length:71
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):COCSUDRAFT_27193
Chain IDs:F
Chain Length:245
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit V, chloroplastic
Gene (Uniprot):COCSUDRAFT_83512
Chain IDs:G
Chain Length:138
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction centre subunit VI
Gene (Uniprot):COCSUDRAFT_53060
Chain IDs:H
Chain Length:133
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:I
Chain Length:36
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:J
Chain Length:41
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:PSI-K
Gene (Uniprot):COCSUDRAFT_48119
Chain IDs:K
Chain Length:131
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:PSI subunit V
Gene (Uniprot):COCSUDRAFT_27681
Chain IDs:R (auth: L)
Chain Length:210
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:L (auth: M)
Chain Length:31
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Photosystem I PsaO
Gene (Uniprot):COCSUDRAFT_24011
Chain IDs:S (auth: O)
Chain Length:142
Number of Molecules:1
Biological Source:Coccomyxa subellipsoidea C-169
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):COCSUDRAFT_25286
Chain IDs:M (auth: a), T (auth: b)
Chain Length:229
Number of Molecules:2
Biological Source:Coccomyxa subellipsoidea C-169
Primary Citation
Structural study of the chlorophyll between Lhca8 and PsaJ in an Antarctica green algal photosystem I-LHCI supercomplex revealed by its atomic structure.
Biochim Biophys Acta Bioenerg 1866 149543 149543 (2025)
PMID: 39947506 DOI: 10.1016/j.bbabio.2025.149543

Abstact

Coccomyxa subellipsoidea is an oleaginous, non-motile unicellular green microalga isolated from Antarctica, and is an attractive candidate for CO2 fixation and biomass production. C. subellipsoidea is the first polar green alga whose genome has been sequenced. Understanding the structure of photosystems from C. subellipsoidea can provide more information about the conversion of light energy into chemical energy under extreme environments. Photosystems I (PSI) is one of the two photosystems highly conserved from cyanobacteria to vascular plants, and associates with a large amount of outer light-harvesting complex (LHC) which absorb light energy and transfer them to the core complex. Here, we determined the structure of the PSI-10 LHCIs and PSI-8 LHCIs supercomplexes from C. subellipsoidea at 1.92 Å and 2.06 Å resolutions by cryo-electron microscopy, respectively. The supercomplex is similar to PSI-LHCI from other green algae, whereas a large amount of water molecules is observed in our structure because of the high-resolution map. Two novel chlorophylls (Chls), Chl a321 in Lhca4 and Chl a314 in Lhca8, are observed at the lumenal side in our structure, in which Lhca8-Chl a314 provides a potential excitation energy transfer (EET) pathway between the inner-belt of LHCI and the core at the lumenal side. A total of three major EET pathways from LHCIs to PSI core are proposed, and C. subellipsoidea might adapt to the extreme environment by transferring energy in these three different EET pathways instead of by two major pathways proposed in other organisms.

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