ISDA: 9KQO

Deposition Date 2024-11-26

Release Date 2025-12-31

Last Version Date 2025-12-31

Entry Detail

PDB ID:

9KQO

Keywords:

NUCLEAR PROTEIN

Title:

cryo-EM structure of RNF20/RNF40-RAD6A-Ub in complex with H2BS112GlcNAc nucleosome

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase BRE1B
Gene (Uniprot):RNF40
Chain IDs:A
Chain Length:60
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O75150 Pfam ID:PF00097

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Polyubiquitin-B
Gene (Uniprot):UBB
Chain IDs:B
Chain Length:75
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:J3QS39 Pfam ID:PF00240

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:C, G
Chain Length:129
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P04908 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-K
Gene (Uniprot):H2BC12
Chain IDs:D, H
Chain Length:125
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:O60814 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3
Gene (Uniprot):CALMAC_LOCUS17614
Chain IDs:E, K
Chain Length:135
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:A0A653DHJ5 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:F, L
Chain Length:102
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (147-MER)
Chain IDs:I
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (147-MER)
Chain IDs:J
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase BRE1A
Gene (Uniprot):RNF20
Chain IDs:M
Chain Length:60
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q5VTR2 Pfam ID:PF00097 EC:2.3.2.27

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 A
Gene (Uniprot):UBE2A
Chain IDs:N (auth: R)
Chain Length:150
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P49459 Pfam ID:PF00179 EC:2.3.2.23

Ligand Molecules