9KQE image
Deposition Date 2024-11-25
Release Date 2025-01-15
Last Version Date 2025-01-15
Entry Detail
PDB ID:
9KQE
Title:
Cryo-EM structure of human VMAT2 in complex with dopamine.
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562,Synaptic vesicular amine transporter
Gene (Uniprot):SLC18A2
Mutagens:M8W,H103I,R107L
Chain IDs:A
Chain Length:632
Number of Molecules:1
Biological Source:Escherichia coli, Homo sapiens
Ligand Molecules
Primary Citation
Drug inhibition and substrate transport mechanisms of human VMAT2.
Nat Commun 16 323 323 (2025)
PMID: 39747030 DOI: 10.1038/s41467-024-55361-0

Abstact

Vesicular monoamine transporter 2 (VMAT2) is crucial for packaging monoamine neurotransmitters into synaptic vesicles, with their dysregulation linked to schizophrenia, mood disorders, and Parkinson's disease. Tetrabenazine (TBZ) and valbenazine (VBZ), both FDA-approved VMAT2 inhibitors, are employed to treat chorea and tardive dyskinesia (TD). Our study presents the structures of VMAT2 bound to substrates serotonin (5-HT) and dopamine (DA), as well as the inhibitors TBZ and VBZ. Utilizing cryo-electron microscopy (cryo-EM), mutagenesis functional assays, and molecular dynamics (MD) simulations, we elucidate the mechanisms of substrate transport and drug inhibition. Our MD simulations indicate potential binding poses of substrate (5-HT) in both cytosol-facing and lumen-facing states, emphasizing the significance of protonation of key acidic residues for substrate release. We demonstrate that TBZ locks VMAT2 in a lumen-facing occluded state, while VBZ stabilizes it in a lumen-facing conformation. These insights enhance our understanding of VMAT2 function and provide valuable insights for the development of novel therapeutic strategies for psychiatric disorders.

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Protein

Chemical

Disease

Primary Citation of related structures