9KQB image
Deposition Date 2024-11-25
Release Date 2025-05-07
Last Version Date 2025-05-21
Entry Detail
PDB ID:
9KQB
Keywords:
Title:
PSII-FCPII supercomplex from haptophyte Chrysotila roscoffensis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.22 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chlorophyll a/c binding protein II (FCPII-1)
Chain IDs:A (auth: 1), C (auth: 7), NA (auth: 5), OA (auth: g)
Chain Length:166
Number of Molecules:4
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chlorophyll a/c binding protein II (FCPII-2)
Chain IDs:EA (auth: 2), FA (auth: 8)
Chain Length:225
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chlorophyll a/c binding protein II (FCPII-4)
Chain IDs:MA (auth: 4), PA (auth: G)
Chain Length:167
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chlorophyll a/c binding protein II (FCPII-5)
Chain IDs:B (auth: 6), J
Chain Length:167
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Light harvesting protein
Gene (Uniprot):PCAR00345_LOCUS20750
Chain IDs:KA (auth: 9), LA (auth: 3)
Chain Length:216
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):PCAR00345_LOCUS34290
Chain IDs:D (auth: A), R (auth: a)
Chain Length:360
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:E (auth: B), S (auth: b)
Chain Length:509
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:IA (auth: C), JA (auth: c)
Chain Length:445
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:GA (auth: D), HA (auth: d)
Chain Length:351
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:F (auth: E), T (auth: e)
Chain Length:82
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:G (auth: F), U (auth: f)
Chain Length:42
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H (psbH)
Chain IDs:H, V (auth: h)
Chain Length:65
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I (psbI)
Chain IDs:I, W (auth: i)
Chain Length:38
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K (psbK)
Chain IDs:K, X (auth: k)
Chain Length:40
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:L, Y (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M (psbM)
Chain IDs:M, Z (auth: m)
Chain Length:130
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Psb36
Gene (Uniprot):PCAR00345_LOCUS38698
Chain IDs:N, AA (auth: n)
Chain Length:36
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:O (auth: T), BA (auth: t)
Chain Length:32
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein W (psbW)
Chain IDs:P (auth: W), CA (auth: w)
Chain Length:53
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein X (psbX)
Chain IDs:Q (auth: X), DA (auth: x)
Chain Length:36
Number of Molecules:2
Biological Source:Chrysotila roscoffensis
Primary Citation
Structure of a photosystem II-FCPII supercomplex from a haptophyte reveals a distinct antenna organization.
Nat Commun 16 4175 4175 (2025)
PMID: 40325014 DOI: 10.1038/s41467-025-59512-9

Abstact

Haptophytes are unicellular algae that produce 30 to 50% of biomass in oceans. Among haptophytes, a subset named coccolithophores is characterized by calcified scales. Despite the importance of coccolithophores in global carbon fixation and CaCO3 production, their energy conversion system is still poorly known. Here we report a cryo-electron microscopic structure of photosystem II (PSII)-fucoxanthin chlorophyll c-binding protein (FCPII) supercomplex from Chyrostila roscoffensis, a representative of coccolithophores. This complex has two sets of six dimeric and monomeric FCPIIs, with distinct orientations. Interfaces of both FCPII/FCPII and FCPII/core differ from previously reported. We also determine the sequence of Psb36, a subunit previously found in diatoms and red algae. The principal excitation energy transfer (EET) pathways involve mainly 5 FCPIIs, where one FCPII monomer mediates EET to CP47. Our findings provide a solid structural basis for EET and energy dissipation pathways occurring in coccolithophores.

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Primary Citation of related structures