9KPL image
Entry Detail
PDB ID:
9KPL
Keywords:
Title:
Crystal structure of T. rubripes Mincle with glucose
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-11-23
Release Date:
2025-04-02
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:C-type lectin domain-containing protein
Chain IDs:A, B (auth: E)
Chain Length:144
Number of Molecules:2
Biological Source:Takifugu rubripes
Primary Citation
Phylogenetic and structural insights into the origin of C-type lectin Mincle in vertebrates.
Immunogenetics 77 18 18 (2025)
PMID: 40119899 DOI: 10.1007/s00251-025-01375-x

Abstact

Our bodies are continuously exposed to injurious insults by infection and tissue damage, which are primarily sensed by innate immune receptors to maintain homeostasis. Among such receptors is macrophage-inducible C-type lectin (Mincle, gene symbol CLEC4E), a member of the C-type lectin receptor (CLR) family, which functions as an immune sensor for both pathogens and damaged self. To monitor these injurious stimuli, Mincle recognizes disaccharide-based pathogen-derived glycolipids and monosaccharide-based intracellular metabolites, such as β-glucosylceramide. Mincle is well-conserved among mammals; however, there are questions that remain unclear, such as from which lower vertebrate did it arise and whether the original ligand was self or non-self. Here, we found homologues of Mincle and its signaling subunit Fc receptor γ chain (FcRγ) in lower vertebrates, such as reptiles, amphibians, and fishes. The crystal structure of a Mincle homologue revealed that fish Mincle possesses a narrower sugar-binding pocket than that of mammalian Mincle, and accommodates only monosaccharide moieties. These results suggest that Mincle may have evolved from a self-recognizing receptor, and its sugar-binding pocket widened during evolution, presumably to adapt to disaccharide-based glycolipids derived from life-threatening pathogens.

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