9KOZ image
Deposition Date 2024-11-22
Release Date 2025-06-25
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9KOZ
Keywords:
Title:
Crystal structure of Arabidopsis thaliana HPPD complexed with iptriazopyrid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.26
R-Value Work:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:4-hydroxyphenylpyruvate dioxygenase
Gene (Uniprot):HPD
Chain IDs:A, B, C, D
Chain Length:444
Number of Molecules:4
Biological Source:Arabidopsis thaliana
Primary Citation
Mechanism of Herbicidal Action and Rice Selectivity of Iptriazopyrid: A Novel Azole Carboxamide-Based Inhibitor of 4-Hydroxyphenylpyruvate Dioxygenase.
J.Agric.Food Chem. 73 15950 15958 (2025)
PMID: 40495343 DOI: 10.1021/acs.jafc.4c11831

Abstact

4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitors are widely used as herbicides. However, the emergence of herbicide-resistant weeds necessitates the development of new herbicides with more diverse chemical structures. Therefore, we evaluated the herbicidal and HPPD inhibitory activities of iptriazopyrid, a novel azole carboxamide compound. Phytotoxic tests on Echinochloa crus-galli demonstrated that iptriazopyrid caused chlorosis at a concentration approximately 10 times lower than that required for the common commercial HPPD inhibitor mesotrione. Furthermore, iptriazopyrid showed strong selectivity for Oryza sativa over the weed in the greenhouse-scale experiment. X-ray crystallography and in vitro inhibitory assays revealed that iptriazopyrid was bound to the enzyme active pocket of HPPD and worked as a slow-binding inhibitor. These findings indicate that this inhibitor has potent herbicidal activity with a chemical structure different from those of existing HPPD inhibitors. Thus, it has potential applications as a novel scaffold in herbicide development.

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