9KOY image
Deposition Date 2024-11-22
Release Date 2025-06-25
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9KOY
Title:
Crystal structure of Oryza sativa HPPD complexed with iptriazopyrid
Biological Source:
Source Organism:
Oryza sativa (Taxon ID: 4530)
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.20
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:4-hydroxyphenylpyruvate dioxygenase
Chain IDs:A, B
Chain Length:446
Number of Molecules:2
Biological Source:Oryza sativa
Primary Citation
Mechanism of Herbicidal Action and Rice Selectivity of Iptriazopyrid: A Novel Azole Carboxamide-Based Inhibitor of 4-Hydroxyphenylpyruvate Dioxygenase.
J.Agric.Food Chem. 73 15950 15958 (2025)
PMID: 40495343 DOI: 10.1021/acs.jafc.4c11831

Abstact

4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitors are widely used as herbicides. However, the emergence of herbicide-resistant weeds necessitates the development of new herbicides with more diverse chemical structures. Therefore, we evaluated the herbicidal and HPPD inhibitory activities of iptriazopyrid, a novel azole carboxamide compound. Phytotoxic tests on Echinochloa crus-galli demonstrated that iptriazopyrid caused chlorosis at a concentration approximately 10 times lower than that required for the common commercial HPPD inhibitor mesotrione. Furthermore, iptriazopyrid showed strong selectivity for Oryza sativa over the weed in the greenhouse-scale experiment. X-ray crystallography and in vitro inhibitory assays revealed that iptriazopyrid was bound to the enzyme active pocket of HPPD and worked as a slow-binding inhibitor. These findings indicate that this inhibitor has potent herbicidal activity with a chemical structure different from those of existing HPPD inhibitors. Thus, it has potential applications as a novel scaffold in herbicide development.

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