9KOM image
Entry Detail
PDB ID:
9KOM
EMDB ID:
Title:
Cryo-EM structure of human pannexin-3 protomer
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-11-20
Release Date:
2025-01-15
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pannexin-3
Chain IDs:A
Chain Length:404
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM structure of the human Pannexin-3 channel.
Biochem.Biophys.Res.Commun. 745 151227 151227 (2025)
PMID: 39721314 DOI: 10.1016/j.bbrc.2024.151227

Abstact

Pannexin-3 (PANX3) is a member of the pannexin family of large-pore, ATP-permeable channels conserved across vertebrates. PANX3 contributes to various developmental and pathophysiological processes by permeating ATP and Ca2+ ions; however, the structural basis of PANX3 channel function remains unclear. Here, we present the cryo-EM structure of human PANX3 at 2.9-3.2 Å. The PANX3 channel is heptameric and forms a transmembrane pore along the central symmetric axis. The narrowest constriction of the pore is composed of an isoleucine ring located in the extracellular region, and its size is comparable to that of other pannexins. A structural variability analysis revealed prominent structural dynamics in intracellular regions. Our structural studies provide a foundation for understanding the detailed properties of pannexin channels.

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