9KOK image
Deposition Date 2024-11-20
Release Date 2025-01-29
Last Version Date 2025-01-29
Entry Detail
PDB ID:
9KOK
Keywords:
Title:
Crystal structure of ExaC, an NAD+-dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.18
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NAD+ dependent aldehyde dehydrogenase ExaC
Gene (Uniprot):exaC
Chain IDs:A, B
Chain Length:507
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa PAO1
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SCY A CYS modified residue
Primary Citation
Structural analysis of ExaC, an NAD + -dependent aldehyde dehydrogenase, from Pseudomonas aeruginosa.
Biochem.Biophys.Res.Commun. 742 151077 151077 (2025)
PMID: 39642707 DOI: 10.1016/j.bbrc.2024.151077

Abstact

The opportunistic pathogen Pseudomonas aeruginosa (Pa) utilizes ethanol as an energy source, however, ethanol metabolism generates acetaldehyde, a toxic byproduct. To mitigate this toxicity, P. aeruginosa employs aldehyde dehydrogenases (ALDHs) to oxidize acetaldehyde into less harmful compounds. ExaC, an NAD+-dependent ALDH from P. aeruginosa (PaExaC) and a member of group X ALDHs, plays a critical role in this detoxification by oxidizing both aldehydes and hydrazones. In this study, we determined the crystal structures of PaExaC in its apo and NAD+ -bound forms. PaExaC functions as a homodimer, with three distinct domains: an NAD+ binding domain, a catalytic domain, and an oligomerization domain. Structural analyses revealed that PaExaC's substrate entry channel (SEC) is optimized for size-selective aldehyde metabolism, with Leu120, Tyr462, and Thr302. Comparative structural and docking analyses with other ALDHs further validated PaExaC's preference for small aliphatic aldehydes and hydrazones. These findings highlight PaExaC's role in aldehyde detoxification, facilitating P. aeruginosa survival in diverse environments, and provide structural insights for developing targeted inhibitors to help treat infections.

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