9KN3 image
Deposition Date 2024-11-18
Release Date 2025-07-23
Last Version Date 2025-07-30
Entry Detail
PDB ID:
9KN3
Title:
Cryo-EM structure of LptDEM complex from Escherichia coli
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.27 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LPS-assembly protein LptD
Gene (Uniprot):lptD
Chain IDs:A
Chain Length:760
Number of Molecules:1
Biological Source:Escherichia coli K-12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LPS-assembly lipoprotein LptE
Gene (Uniprot):lptE
Chain IDs:B
Chain Length:175
Number of Molecules:1
Biological Source:Escherichia coli K-12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Uncharacterized lipoprotein YifL
Gene (Uniprot):lptM
Chain IDs:C
Chain Length:60
Number of Molecules:1
Biological Source:Escherichia coli K-12
Ligand Molecules
Primary Citation
Structural basis of lipopolysaccharide translocon assembly mediated by the small lipoprotein LptM.
Cell Rep 44 116013 116013 (2025)
PMID: 40674207 DOI: 10.1016/j.celrep.2025.116013

Abstact

Gram-negative bacteria possess an outer membrane (OM) that acts as a barrier against toxic compounds. Lipopolysaccharide (LPS) in the outer leaflet of the OM is crucial for barrier function and is transported to the OM by the LPS transport system. The LPS translocon (the LptDE complex), mediates LPS assembly into the OM. Recently, the small lipoprotein LptM was identified as an LptDE interactor that facilitates LptD maturation. However, its mechanism remains unclear. Here, we investigate the detailed interaction between LptM and LptD. We find that LptM interacts with the folded LptD intermediate at the late stage of its maturation. Mutational analyses demonstrate that the N-terminal conserved region of LptM is essential for its function. Cryoelectron microscopy structural analysis of the Escherichia coli LptDEM complex, combined with biochemical analyses, reveals the molecular basis of the LptM-LptD interaction and its functional importance. Thus, we propose that LptM stabilizes LptD for proper assembly.

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Primary Citation of related structures